Index

_

__init__() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ArchetypeTracker method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) (archetypax.models.biarchetypes.BiarchetypalAnalysis method) (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method) (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method) (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method)

A

add_model() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method) ArchetypalAnalysis (class in archetypax) (class in archetypax.models.base) ArchetypalAnalysisEvaluator (class in archetypax.tools.evaluation) ArchetypalAnalysisInterpreter (class in archetypax.tools.interpret) ArchetypalAnalysisVisualizer (class in archetypax.tools.visualization) archetypax module archetypax.models module archetypax.models.archetypes module archetypax.models.base module

archetypax.models.biarchetypes module archetypax.models.sparse_archetypes module archetypax.tools module archetypax.tools.evaluation module archetypax.tools.interpret module archetypax.tools.visualization module archetype_feature_importance() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) archetype_separation() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method) ArchetypeTracker (class in archetypax.models.archetypes)

B

BiarchetypalAnalysis (class in archetypax.models.biarchetypes) BiarchetypalAnalysisEvaluator (class in archetypax.tools.evaluation)

BiarchetypalAnalysisInterpreter (class in archetypax.tools.interpret) BiarchetypalAnalysisVisualizer (class in archetypax.tools.visualization)

C

cluster_purity() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method) clustering_metrics() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method)

comprehensive_evaluation() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method) compute_information_gain() (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method) convex_hull_metrics() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method)

D

directional_init() (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) diversify_archetypes() (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method)

dominant_archetype_purity() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method)

E

evaluate_all_models() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method)

explained_variance() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method)

F

feature_consistency() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) feature_distinctiveness() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method) fit() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ArchetypeTracker method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) (archetypax.models.biarchetypes.BiarchetypalAnalysis method) (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method)

fit_transform() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) (archetypax.models.biarchetypes.BiarchetypalAnalysis method) (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method)

G

get_all_archetypes() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) get_all_weights() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) get_archetype_sparsity() (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method) get_biarchetypes() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) get_col_archetypes() (archetypax.models.biarchetypes.BiarchetypalAnalysis method)

get_col_weights() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) get_loss_history() (archetypax.ArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) get_row_archetypes() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) get_row_weights() (archetypax.models.biarchetypes.BiarchetypalAnalysis method)

I

ImprovedArchetypalAnalysis (class in archetypax.models.archetypes)

information_gain() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method)

K

kmeans_pp_init() (archetypax.models.archetypes.ImprovedArchetypalAnalysis method)

L

loss_function() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) (archetypax.models.biarchetypes.BiarchetypalAnalysis method) (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method)

M

module archetypax archetypax.models archetypax.models.archetypes archetypax.models.base archetypax.models.biarchetypes archetypax.models.sparse_archetypes archetypax.tools archetypax.tools.evaluation archetypax.tools.interpret archetypax.tools.visualization

P

plot_archetype_distribution() (archetypax.tools.visualization.ArchetypalAnalysisVisualizer static method) plot_archetype_feature_comparison() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) plot_archetype_profiles() (archetypax.tools.visualization.ArchetypalAnalysisVisualizer static method) plot_archetypes_2d() (archetypax.tools.visualization.ArchetypalAnalysisVisualizer static method) plot_biarchetypal_reconstruction() (archetypax.tools.visualization.BiarchetypalAnalysisVisualizer static method) plot_convex_hull() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) plot_distance_matrix() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) plot_dual_archetypes_2d() (archetypax.tools.visualization.BiarchetypalAnalysisVisualizer static method) plot_dual_membership_heatmap() (archetypax.tools.visualization.BiarchetypalAnalysisVisualizer static method) plot_dual_simplex_2d() (archetypax.tools.visualization.BiarchetypalAnalysisVisualizer static method) plot_entropy_vs_reconstruction() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) plot_feature_importance_heatmap() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) plot_interpretability_heatmap() (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method) plot_interpretability_metrics() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) plot_loss() (archetypax.tools.visualization.ArchetypalAnalysisVisualizer static method) plot_membership_weights() (archetypax.tools.visualization.ArchetypalAnalysisVisualizer static method) plot_mixture_effect() (archetypax.tools.visualization.BiarchetypalAnalysisVisualizer static method) plot_purity_distribution() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) plot_reconstruction_comparison() (archetypax.tools.visualization.ArchetypalAnalysisVisualizer static method)

plot_simplex_2d() (archetypax.tools.visualization.ArchetypalAnalysisVisualizer static method) plot_weight_distributions() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) print_evaluation_report() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method) print_summary() (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method) project_archetypes() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ArchetypeTracker method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) project_archetypes_convex_hull() (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) project_archetypes_knn() (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) project_archetypes_with_adaptive_strength() (archetypax.models.archetypes.ArchetypeTracker method) project_col_archetypes() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) project_col_coefficients() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) project_row_archetypes() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) project_row_coefficients() (archetypax.models.biarchetypes.BiarchetypalAnalysis method) project_weights() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method)

Q

qhull_init() (archetypax.models.archetypes.ImprovedArchetypalAnalysis method)

R

reconstruct() (archetypax.ArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) (archetypax.models.biarchetypes.BiarchetypalAnalysis method)

reconstruction_error() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method)

S

set_fit_request() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ArchetypeTracker method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) (archetypax.models.biarchetypes.BiarchetypalAnalysis method) (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method)

SparseArchetypalAnalysis (class in archetypax.models.sparse_archetypes) sparsity_coefficient() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method) suggest_optimal_archetypes() (archetypax.tools.interpret.ArchetypalAnalysisInterpreter method) suggest_optimal_biarchetypes() (archetypax.tools.interpret.BiarchetypalAnalysisInterpreter method)

T

transform() (archetypax.ArchetypalAnalysis method) (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.base.ArchetypalAnalysis method) (archetypax.models.biarchetypes.BiarchetypalAnalysis method)

U

update_archetypes() (archetypax.models.archetypes.ImprovedArchetypalAnalysis method) (archetypax.models.sparse_archetypes.SparseArchetypalAnalysis method)

V

visualize_boundary_proximity() (archetypax.models.archetypes.ArchetypeTracker method)

visualize_movement() (archetypax.models.archetypes.ArchetypeTracker method)

W

weight_diversity() (archetypax.tools.evaluation.ArchetypalAnalysisEvaluator method) (archetypax.tools.evaluation.BiarchetypalAnalysisEvaluator method)